miRBase entry: oan-mir-19a

Stem-loop oan-mir-19a


Accession
MI0006873
Description
Ornithorhynchus anatinus oan-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

2291 reads, 59 reads per million, 5 experiments
uugggguggucuuguuuuuguuuguuuuuuuuuuuuuuuguuugcagcucucuguUAGUUUUGCAUAGUUGCACUAcaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAcgguggccugcuauuuccuacaucga
...........................................((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))...............

Structure
uugggguggucuuguuuuuguuuguuuuuuuuuuuuuuuguuu    c  u                 --      ---    ag 
                                           gcag uc cuguUAGUUUUGCAUAG  UUGCAC   UAca  a
                                           |||| || |||||||||||||||||  ||||||   ||||  a
                                           cguc gg ggcAGUCAAAACGUAUC  AACGUG   augu  g
----------------------------agcuacauccuuuau    c  u                 UA      Uug    aa 


Annotation confidence Not enough data
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Genome context
Ultra284: 6728409-6728548 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from oan-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-19a-5p

Accession MIMAT0007147
Description Ornithorhynchus anatinus oan-miR-19a-5p mature miRNA
Sequence 56 - UAGUUUUGCAUAGUUGCACUA - 76
Evidence experimental
Illumina [1]

Mature oan-miR-19a-3p

Accession MIMAT0007148
Description Ornithorhynchus anatinus oan-miR-19a-3p mature miRNA
Sequence 92 - UGUGCAAAUCUAUGCAAAACUGA - 114
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004