miRBase entry: oan-mir-20a-1

Stem-loop oan-mir-20a-1


Accession
MI0006872
Description
Ornithorhynchus anatinus oan-mir-20a-1 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

684 reads, 20 reads per million, 5 experiments
ggcucgcagaucaaacaguucuuguagcacUAAAGUGCUUAUAGUGCAGGcaauguuuagucgucuACUGCAUUAUGAGCACUUCAAGUccugcaagcuguagaacuacaacuucaguaugucuuucaaucaagcu
((((..........((((..(((((((.(((.(((((((((((((((((...(((......)))...)))))))))))))))))..))).))))))))))).(((..(((((....)).)))..))).....))))

Structure
    ---------------------cgcagaucaa    uu       c   -A                 Gca   uu 
ggcu                               acag  cuuguag acU  AAGUGCUUAUAGUGCAG   aug  u
||||                               ||||  ||||||| |||  |||||||||||||||||   |||   
ucga                               uguc  gaacguc UGA  UUCACGAGUAUUACGUC   ugc  a
    acuaacuuucuguaugacuucaacaucaaga    --       c   AC                 Auc   ug 


Annotation confidence Not enough data
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Genome context
Ultra284: 715098-715233 [+]

Database links

Mature oan-miR-20a-5p

Accession MIMAT0007145
Description Ornithorhynchus anatinus oan-miR-20a-5p mature miRNA
Sequence 31 - UAAAGUGCUUAUAGUGCAGG - 50
Evidence experimental
Illumina [1]

Mature oan-miR-20a-1-3p

Accession MIMAT0007146
Description Ornithorhynchus anatinus oan-miR-20a-1-3p mature miRNA
Sequence 67 - ACUGCAUUAUGAGCACUUCAAGU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004