Stem-loop oan-mir-221

Accession

MI0006866

Description

Ornithorhynchus anatinus oan-mir-221 precursor miRNA

Gene family

MIPF0000051; mir-221

Sequence

115130 reads, 2549 reads per million, 5 experiments

uucagguuugaggcaugaACCUGGCAUACAAUGUAGAAUucuguauuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUcaagcuaccugga
(((((((....(((.(((((((((((.(((((((((....((((...(((...)))))))))))))))).))))))).)))).))))))))))

Structure

       uuga   a    -       U         AAUu    auu   u 
uucaggu    ggc ugaA CCUGGCA ACAAUGUAG    cugu   ugu  
|||||||    ||| |||| ||||||| |||||||||    ||||   ||| a
aggucca    ucg acUU GGGUCGU UGUUACAUC    GAca   acg  
       ----   a    U       C         ----    ---   a 

Annotation confidence High

Genome context

Ultra222: 5162753-5162845 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-221

Mature oan-miR-221-5p

• Accession: MIMAT0007134
• Description: Ornithorhynchus anatinus oan-miR-221-5p mature miRNA
• Sequence: 19 - ACCUGGCAUACAAUGUAGAAU - 39
• Evidence: experimental ; Illumina [1]

Mature oan-miR-221-3p

• Accession: MIMAT0007135
• Description: Ornithorhynchus anatinus oan-miR-221-3p mature miRNA
• Sequence: 59 - AGCUACAUUGUCUGCUGGGUUU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004