miRBase entry: oan-mir-10a

Stem-loop oan-mir-10a


Accession
MI0006859
Description
Ornithorhynchus anatinus oan-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

252254 reads, 5731 reads per million, 5 experiments
aaagaagauaugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaguuucguggucaCAAAUUCGUAUCUAGGGGAAUauguaguugacauaaacacuccggucauuuuuu
(((((((((.(((.((((..((((((((.((((.(((((.((((((((((..(.((...)).)...)))))))))).))))))))).))))))))..))))...))).....))).))))))

Structure
      -   ----a   --c    uu        A    G     C          -ua g  g 
aaagaa gau     ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUg   a ga  
|||||| |||     |||   ||||  |||||||| |||| ||||| ||||||||||   | || u
uuuuuu cug     aca   acag  gauguaUA GGGG AUCUA GCUUAAACac   u cu  
      a   gccuc   aau    uu        A    -     U          ugg g  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Contig81155: 820-941 [+]

Database links

Mature oan-miR-10a-5p

Accession MIMAT0007122
Description Ornithorhynchus anatinus oan-miR-10a-5p mature miRNA
Sequence 28 - UACCCUGUAGAUCCGAAUUUGU - 49
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-10a-3p

Accession MIMAT0007123
Description Ornithorhynchus anatinus oan-miR-10a-3p mature miRNA
Sequence 69 - CAAAUUCGUAUCUAGGGGAAU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004