miRBase entry: oan-mir-124a-1

Stem-loop oan-mir-124a-1


Accession
MI0006854
Description
Ornithorhynchus anatinus oan-mir-124a-1 precursor miRNA
Gene family
MIPF0000021; mir-124


Sequence

86714 reads, 1754 reads per million, 5 experiments
cacuaggccugucucucCGUGUUCACAGCGGACCUUGAUuuaaauuuguacacaauUAAGGCACGCGGUGAAUGCCAagagcccagccaaag
.....(((..(.((((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))).)..)))....

Structure
cacua   cu u    cC        A   GA        uaaau 
     ggc  g cucu  GUGUUCAC GCG  CCUUGAUu     u
     |||  | ||||  |||||||| |||  ||||||||     u
     ccg  c gaga  CGUAAGUG CGC  GGAAUuaa     g
-gaaa   ac c    AC        G   AC        cacau 


Annotation confidence High
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Genome context
Contig9524: 20318-20409 [+]

Database links

Mature oan-miR-124a-5p

Accession MIMAT0007113
Description Ornithorhynchus anatinus oan-miR-124a-5p mature miRNA
Sequence 18 - CGUGUUCACAGCGGACCUUGAU - 39
Evidence experimental
Illumina [1]

Mature oan-miR-124a-1-3p

Accession MIMAT0007114
Description Ornithorhynchus anatinus oan-miR-124a-1-3p mature miRNA
Sequence 57 - UAAGGCACGCGGUGAAUGCCA - 77
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004