miRBase entry: oan-mir-1422o

Stem-loop oan-mir-1422o


Accession
MI0006847
Description
Ornithorhynchus anatinus oan-mir-1422o precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

42 reads, 75 reads per million, 1 experiments
aaucaugauucuggugucaUACAAGACAUAUGUUUUCUUGAUauucacauaauCUGGAAAACUAUGUUUUGUGUGauacgagucaauau
.....((((((..(((((((((((((((((.(((((((.(((.........))).))))))))))))))))))))))))))))))....

Structure
aauca      ug                 U       U   auu 
     ugauuc  gugucaUACAAGACAUA GUUUUCU GAU   c
     ||||||  ||||||||||||||||| ||||||| |||   a
     acugag  cauaGUGUGUUUUGUAU CAAAAGG Cua   c
-uaua      --                 -       U   aua 


Annotation confidence Not enough data
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Genome context
Contig8388: 5562-5650 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from oan-mir-1422o
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422o-5p

Accession MIMAT0007103
Description Ornithorhynchus anatinus oan-miR-1422o-5p mature miRNA
Sequence 20 - UACAAGACAUAUGUUUUCUUGAU - 42
Evidence experimental
Illumina [1]

Mature oan-miR-1422o-3p

Accession MIMAT0007104
Description Ornithorhynchus anatinus oan-miR-1422o-3p mature miRNA
Sequence 54 - CUGGAAAACUAUGUUUUGUGUG - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004