miRBase entry: oan-mir-130a

Stem-loop oan-mir-130a


Accession
MI0006844
Description
Ornithorhynchus anatinus oan-mir-130a precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

144 reads, 3 reads per million, 5 experiments
gcccgguccuguccuucgcucccggccggAGCUCUUUUCACAUUGUGCUacugucugcgcccgucacuagcagugcaauguaauaaggggcuucggcggggcagcugcuaccaucuccgggu
((((((...((......((((((.(((((((((((((..((((((((((.(((...((....))...))).))))))))))...))))))))))))).))).)))......))...))))))

Structure
      ucc  uccuuc   -   g             -UC          a   ucu  g 
gcccgg   ug      gcu ccc gccggAGCUCUUU   ACAUUGUGCU cug   gc c
||||||   ||      ||| ||| |||||||||||||   |||||||||| |||   ||  
ugggcc   ac      cga ggg cggcuucggggaa   uguaacguga gau   ug c
      ucu  caucgu   c   g             uaa          c   cac  c 


Annotation confidence Not enough data
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Genome context
Contig83413: 58-179 [-]

Database links

Mature oan-miR-130a

Accession MIMAT0007098
Description Ornithorhynchus anatinus oan-miR-130a mature miRNA
Sequence 30 - AGCUCUUUUCACAUUGUGCU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004