miRBase entry: oan-mir-590

Stem-loop oan-mir-590


Accession
MI0006843
Description
Ornithorhynchus anatinus oan-mir-590 precursor miRNA
Gene family
MIPF0000418; mir-590


Sequence

19219 reads, 400 reads per million, 5 experiments
uuuagaaacaagccuaagccaaucagaaauGAGCUUAUCCAUAAAAGUACAGuaucgucaguaaaccugUACUUUUAUGGAUAAGCUAGUcucugauugaaacacgcaacaagucuccucaa
(((((........))))).((((((((.((.(((((((((((((((((((((..............))))))))))))))))))))).)).)))))))).......................

Structure
----uuuagaaacaagccuaagc        a  G                     uaucgu 
                       caaucaga au AGCUUAUCCAUAAAAGUACAG      c
                       |||||||| || |||||||||||||||||||||       
                       guuagucu UG UCGAAUAGGUAUUUUCAUguc      a
aacuccucugaacaacgcacaaa        c  A                     caaaug 


Annotation confidence High
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Genome context
Contig7702: 7118-7239 [-]

Database links

Mature oan-miR-590-5p

Accession MIMAT0007096
Description Ornithorhynchus anatinus oan-miR-590-5p mature miRNA
Sequence 31 - GAGCUUAUCCAUAAAAGUACAG - 52
Evidence experimental
Illumina [1]

Mature oan-miR-590-3p

Accession MIMAT0007097
Description Ornithorhynchus anatinus oan-miR-590-3p mature miRNA
Sequence 70 - UACUUUUAUGGAUAAGCUAGU - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004