miRBase entry: oan-mir-1422j

Stem-loop oan-mir-1422j


Accession
MI0006841
Description
Ornithorhynchus anatinus oan-mir-1422j precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

3793 reads, 3679 reads per million, 3 experiments
agcuuggccagauagaaugaccguuaugauucugguuUCAAUCCAGAGCAGAAUUUUCUuuacauguagaaaaucuagAAAACUGCAUCUGGAUUGACAucauggucagaauauacacucagagcu
(((((......(((...(((((((.(((.........((((((((((((((..((((((.................)))))))))).))))))))))))).)))))))...))).......)))))

Structure
     -ggccag   gaa       u   auucugguu          -    AA      uuacaug 
agcuu       aua   ugaccgu aug         UCAAUCCAGA GCAG  UUUUCU       u
|||||       |||   ||||||| |||         |||||||||| ||||  ||||||       a
ucgag       uau   acuggua uAC         AGUUAGGUCU CGUC  AAAAga       g
     acucaca   aag       c   ---------          A    --      ucuaaaa 


Annotation confidence High
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Genome context
Contig7359: 556-681 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-1422j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422j-5p

Accession MIMAT0007092
Description Ornithorhynchus anatinus oan-miR-1422j-5p mature miRNA
Sequence 38 - UCAAUCCAGAGCAGAAUUUUCU - 59
Evidence experimental
Illumina [1]

Mature oan-miR-1422j-3p

Accession MIMAT0007093
Description Ornithorhynchus anatinus oan-miR-1422j-3p mature miRNA
Sequence 79 - AAAACUGCAUCUGGAUUGACA - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004