miRBase entry: oan-mir-1421u

Stem-loop oan-mir-1421u


Accession
MI0006839
Description
Ornithorhynchus anatinus oan-mir-1421u precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

52 reads, 93 reads per million, 1 experiments
ggccccaggugacauacagcauggugugAGGUGGCCGUACCUCAUGCAGAgugauggcggaauaugcugcauagugugcggccuccccacacagugcugggucucucugguc
....(((((.(((...((((((.(((((.((.((((((((((.((((((....((......))...)))))))).)))))))).)).))))).)))))).))).).))))..

Structure
ggcc    - u   aua      g     A  U        -  C      Agug  gg 
    ccag g gac   cagcau gugug GG GGCCGUAC CU AUGCAG    au  c
    |||| | |||   |||||| ||||| || |||||||| || ||||||    ||   
    gguc c cug   gucgug cacac cc ccggcgug ga uacguc    ua  g
--cu    u u   --g      a     c  u        u  -      -gua  ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig7160: 21999-22110 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421u
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421u-5p

Accession MIMAT0007088
Description Ornithorhynchus anatinus oan-miR-1421u-5p mature miRNA
Sequence 29 - AGGUGGCCGUACCUCAUGCAGA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004