miRBase entry: oan-mir-1421n-2

Stem-loop oan-mir-1421n-2


Accession
MI0006838
Description
Ornithorhynchus anatinus oan-mir-1421n-2 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

1051 reads, 696 reads per million, 4 experiments
gaccuaccgcacggugugAGGUGGUCACAUGAGUUGCAGUaggguaguggaacgcacUGCAUCCCAUGUGACCGCCCUacacagugccguguc
....(((.((((.(((((.((((((((((((.(.((((((.(.((......)).))))))).).)))))))))))).))))).)))).)))..

Structure
gacc   c    g     A            A U      a g  ag 
    uac gcac gugug GGUGGUCACAUG G UGCAGU g gu  u
    ||| |||| ||||| |||||||||||| | |||||| | ||   
    gug cgug cacaU CCGCCAGUGUAC C ACGUca c ca  g
--cu   c    a     C            C U      - g  ag 


Annotation confidence Not enough data
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Genome context
Contig7160: 19257-19349 [-]
Clustered miRNAs
15 other miRNAs are < 10 kb from oan-mir-1421n-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421n-5p

Accession MIMAT0007074
Description Ornithorhynchus anatinus oan-miR-1421n-5p mature miRNA
Sequence 19 - AGGUGGUCACAUGAGUUGCAGU - 40
Evidence experimental
Illumina [1]

Mature oan-miR-1421n-2-3p

Accession MIMAT0009168
Description Ornithorhynchus anatinus oan-miR-1421n-2-3p mature miRNA
Sequence 58 - UGCAUCCCAUGUGACCGCCCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004