miRBase entry: oan-mir-1421p-1

Stem-loop oan-mir-1421p-1


Accession
MI0006833
Description
Ornithorhynchus anatinus oan-mir-1421p-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

890 reads, 806 reads per million, 2 experiments
gugAGGGGGCCGUACCUCAUGCAGAguguugguggaauuuccUGCAUAGUGUGCGGCCUCCCCAc
(((.(((((((((((((.((((((...(((.....)))...)))))))).))))))))))).)))

Structure
   A           -  C      Agu   g 
gug GGGGGCCGUAC CU AUGCAG   guu g
||| ||||||||||| || ||||||   ||| u
cAC CCUCCGGCGUG GA UACGUc   uaa g
   C           U  -      cuu   g 


Annotation confidence Not enough data
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Genome context
Contig7160: 12428-12492 [-]
Clustered miRNAs
19 other miRNAs are < 10 kb from oan-mir-1421p-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421p-5p

Accession MIMAT0007078
Description Ornithorhynchus anatinus oan-miR-1421p-5p mature miRNA
Sequence 4 - AGGGGGCCGUACCUCAUGCAGA - 25
Evidence experimental
Illumina [1]

Mature oan-miR-1421p-3p

Accession MIMAT0007079
Description Ornithorhynchus anatinus oan-miR-1421p-3p mature miRNA
Sequence 43 - UGCAUAGUGUGCGGCCUCCCCA - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004