miRBase entry: oan-mir-1421o

Stem-loop oan-mir-1421o


Accession
MI0006832
Description
Ornithorhynchus anatinus oan-mir-1421o precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

60 reads, 93 reads per million, 2 experiments
gcagcugccuuaaugcacggugugagaUGGUCACAUGAGGUACAGUGUGaugguggaacaCACUGCAUCCCAAGUGAUCACCcuacauggcgcugu
(((((.(((..........(((((.(.(((((((.((.(((.(((((((.........))))))).))).)).))))))).).)))))))))))))

Structure
     u   uuaaugcacg     a a       A  A   A       aug 
gcagc gcc          gugug g UGGUCAC UG GGU CAGUGUG   g
||||| |||          ||||| | ||||||| || ||| |||||||   u
ugucg cgg          uacau C ACUAGUG AC CUA GUCACac   g
     -   ----------     c C       A  C   C       aag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig7160: 10811-10906 [-]
Clustered miRNAs
19 other miRNAs are < 10 kb from oan-mir-1421o
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421o-5p

Accession MIMAT0007076
Description Ornithorhynchus anatinus oan-miR-1421o-5p mature miRNA
Sequence 28 - UGGUCACAUGAGGUACAGUGUG - 49
Evidence experimental
Illumina [1]

Mature oan-miR-1421o-3p

Accession MIMAT0007077
Description Ornithorhynchus anatinus oan-miR-1421o-3p mature miRNA
Sequence 61 - CACUGCAUCCCAAGUGAUCACC - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004