miRBase entry: oan-mir-1419a

Stem-loop oan-mir-1419a


Accession
MI0006829
Description
Ornithorhynchus anatinus oan-mir-1419a precursor miRNA
Gene family
MIPF0000570; mir-1419


Sequence

47 reads, 50 reads per million, 3 experiments
gagugauggugucacgcacAGUGCCGGGAGGUGGCAUCAGGugcuaacucguuuccUGAUAUCAUCACCCAGCAUCGCgcauguccaucaagcacc
(..((((((...((.((.(.((((.(((.(((((.((((((.((......))..)))))).))))).))).)))).).)).)).))))))..)...

Structure
--- ag      ugu  c  a A    C   A     C      -u  ua 
   g  ugaugg   ca gc c GUGC GGG GGUGG AUCAGG  gc  a
   |  ||||||   || || | |||| ||| ||||| ||||||  ||   
   c  acuacc   gu cg G UACG CCC CUACU UAGUcc  ug  c
cca ga      --u  a  C C    A   A     A      uu  cu 


Annotation confidence Not enough data
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Genome context
Contig7160: 5129-5224 [-]
Clustered miRNAs
15 other miRNAs are < 10 kb from oan-mir-1419a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1419a-5p

Accession MIMAT0007070
Description Ornithorhynchus anatinus oan-miR-1419a-5p mature miRNA
Sequence 20 - AGUGCCGGGAGGUGGCAUCAGG - 41
Evidence experimental
Illumina [1]

Mature oan-miR-1419a-3p

Accession MIMAT0007071
Description Ornithorhynchus anatinus oan-miR-1419a-3p mature miRNA
Sequence 57 - UGAUAUCAUCACCCAGCAUCGC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004