miRBase entry: oan-mir-23a

Stem-loop oan-mir-23a


Accession
MI0006824
Description
Ornithorhynchus anatinus oan-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

27307 reads, 452 reads per million, 5 experiments
ugccgccggcggcuGGGGUUCCUGGUGAUGCGAUUUucuugugcucgccaaaAUCACAUUGCCAGGGAUUUCCAacuggcggcg
.((((((((..(..((((((((((((((((.((((((..((....))..)))))).)))))))))))))))))..)))))))).

Structure
u        cg cu                C      cu  u 
 gccgccgg  g  GGGGUUCCUGGUGAUG GAUUUu  ug g
 ||||||||  |  |||||||||||||||| ||||||  ||  
 cggcgguc  C  CUUUAGGGACCGUUAC CUAaaa  gc c
g        aA --                A      cc  u 


Annotation confidence High
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Genome context
Contig6812: 2753-2836 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-23a-5p

Accession MIMAT0007060
Description Ornithorhynchus anatinus oan-miR-23a-5p mature miRNA
Sequence 15 - GGGGUUCCUGGUGAUGCGAUUU - 36
Evidence experimental
Illumina [1]

Mature oan-miR-23a-3p

Accession MIMAT0007061
Description Ornithorhynchus anatinus oan-miR-23a-3p mature miRNA
Sequence 53 - AUCACAUUGCCAGGGAUUUCCA - 74
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004