Stem-loop oan-mir-125

Accession

MI0006816

Description

Ornithorhynchus anatinus oan-mir-125 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

256409 reads, 4572 reads per million, 5 experiments

aaggaauuacuugcugcgccccucucaaUCCCUGAGACCCUAACUUGUGAuguuucccguuuaaauccACGGGUUAGGUUCUUGGGAGCugugaguugugccuu
(((......)))...((((..(((.((.((((.((((.(((((((((((..................))))))))))).))))))))..)).)))..))))...

Structure

aaggaauuacuugcu    cc   u  -a    U    C           Auguuucc 
               gcgc  cuc ca  UCCC GAGA CCUAACUUGUG        c
               ||||  ||| ||  |||| |||| |||||||||||         
               cgug  gag gu  AGGG UUCU GGAUUGGGCAc        g
------------uuc    uu   u  CG    -    U           cuaaauuu 

Annotation confidence High

Genome context

Contig534: 330601-330704 [+]

Mature oan-miR-125-5p

• Accession: MIMAT0007048
• Description: Ornithorhynchus anatinus oan-miR-125-5p mature miRNA
• Sequence: 29 - UCCCUGAGACCCUAACUUGUGA - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-125-3p

• Accession: MIMAT0007049
• Description: Ornithorhynchus anatinus oan-miR-125-3p mature miRNA
• Sequence: 69 - ACGGGUUAGGUUCUUGGGAGC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004