Stem-loop oan-mir-100

Accession

MI0006815

Description

Ornithorhynchus anatinus oan-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

564104 reads, 8149 reads per million, 5 experiments

gccuguugccacaAACCCGUAGAUCCGAACUUGUGgugauauuccacaCAAGCUUGUGUCUAUAGGUAUgugucugugggc
(((((..(.((((.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).)))).)..)))))

Structure

     uu c    A   C      C   A      g  au 
gccug  g caca ACC GUAGAU CGA CUUGUG ug  a
|||||  | |||| ||| |||||| ||| |||||| ||   
cgggu  c gugU UGG UAUCUG GUU GAACac ac  u
     gu u    A   A      U   C      -  cu 

Annotation confidence High

Genome context

Contig534: 284953-285033 [+]

Mature oan-miR-100-5p

• Accession: MIMAT0007046
• Description: Ornithorhynchus anatinus oan-miR-100-5p mature miRNA
• Sequence: 14 - AACCCGUAGAUCCGAACUUGUG - 35
• Evidence: experimental ; Illumina [1]

Mature oan-miR-100-3p

• Accession: MIMAT0007047
• Description: Ornithorhynchus anatinus oan-miR-100-3p mature miRNA
• Sequence: 49 - CAAGCUUGUGUCUAUAGGUAU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004