Stem-loop oan-mir-30b

Accession

MI0006813

Description

Ornithorhynchus anatinus oan-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

8195 reads, 173 reads per million, 5 experiments

ccggccggcaaaaccgaguucgaguucaUGUAAACAUCCUACACUCAGCUgugacccacccagcggCUGGGAGGGGGAUGUUUGCUucaaccgacuuggaaccgcagccgg
(((((..((....((((((.((.(((...(((((((((((...(((((((((..........)))))))))...)))))))))))...)))))))))))....)).)))))

Structure

     cg  aaaa      u  a   caU           ACA         gacc 
ccggc  gc    ccgagu cg guu   GUAAACAUCCU   CUCAGCUgu    c
|||||  ||    |||||| || |||   |||||||||||   |||||||||     
ggccg  cg    gguuca gc caa   CGUUUGUAGGG   GGGUCggcg    a
     -a  ccaa      -  -   cuU           GGA         accc 

Annotation confidence High

Genome context

Contig510: 35999-36109 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-30b

Mature oan-miR-30b-5p

• Accession: MIMAT0007043
• Description: Ornithorhynchus anatinus oan-miR-30b-5p mature miRNA
• Sequence: 29 - UGUAAACAUCCUACACUCAGCU - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-30b-3p

• Accession: MIMAT0007044
• Description: Ornithorhynchus anatinus oan-miR-30b-3p mature miRNA
• Sequence: 67 - CUGGGAGGGGGAUGUUUGCU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004