Stem-loop oan-mir-1365

Accession

MI0006801

Description

Ornithorhynchus anatinus oan-mir-1365 precursor miRNA

Sequence

16348 reads, 336 reads per million, 5 experiments

acuagaagacagcuggagugcauggcacugUACUGGGCACCACCUGUAUGCAgagcauuauacuagaugCCUACUGGAGUGCCUAGCACuguacugagcaccaucaacuucugu
..((((((.(((.((.(((((..((((((.((.((((((.(...(((((((...))).))))...).)))))).)).))))))..))))).)))))...........)))))).

Structure

ac      ----------a   c  g     au      g  C      C ACC    -   A 
  uagaag           cag ug agugc  ggcacu UA UGGGCA C   UGUA UGC  
  ||||||           ||| || |||||  |||||| || |||||| |   |||| ||| g
  gucuuc           guc au uCACG  CCGUGA GU AUCCgu g   auau acg  
-u      aacuaccacga   -  g     AU      G  C      a auc    u   a 

Annotation confidence High

Genome context

Contig38454: 4917-5030 [+]

Mature oan-miR-1365-5p

• Accession: MIMAT0007028
• Description: Ornithorhynchus anatinus oan-miR-1365-5p mature miRNA
• Sequence: 31 - UACUGGGCACCACCUGUAUGCA - 52
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1365-3p

• Accession: MIMAT0007029
• Description: Ornithorhynchus anatinus oan-miR-1365-3p mature miRNA
• Sequence: 70 - CCUACUGGAGUGCCUAGCAC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004