miRBase entry: oan-mir-1363

Stem-loop oan-mir-1363


Accession
MI0006799
Description
Ornithorhynchus anatinus oan-mir-1363 precursor miRNA


Sequence

187 reads, 5 reads per million, 3 experiments
gagacagagccggguaugggcagagggaccGAGGGCCCCGGAACUCGAGCCGcagcgagauccgacccgGUCGAGCCCCUGGGGCUGUCCGuccugcuguccggguccucguucuggaugagucuc
((((((((((.(((..(((((((.(((((.((.((((((((..(((((.(((...((.....))...))))))))..)).)))))).)).))))).)))))))...))).)))))......)))))

Structure
     ------     c   -ua       a     c  G      -  AA     G   cag  a 
gagac      agagc ggg   ugggcag gggac GA GGCCCC GG  CUCGA CCG   cg g
|||||      ||||| |||   ||||||| ||||| || |||||| ||  ||||| |||   || a
cucug      ucuug ucc   gccuguc uccuG CU UCGGGG CC  GAGCU Ggc   gc u
     aguagg     c   ugg       g     C  G      U  CC     -   cca  c 


Annotation confidence Not enough data
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Genome context
Contig37792: 6308-6433 [-]

Database links

Mature oan-miR-1363-5p

Accession MIMAT0007025
Description Ornithorhynchus anatinus oan-miR-1363-5p mature miRNA
Sequence 31 - GAGGGCCCCGGAACUCGAGCCG - 52
Evidence experimental
Illumina [1]

Mature oan-miR-1363-3p

Accession MIMAT0007026
Description Ornithorhynchus anatinus oan-miR-1363-3p mature miRNA
Sequence 70 - GUCGAGCCCCUGGGGCUGUCCG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004