Stem-loop oan-mir-223

Accession

MI0006796

Description

Ornithorhynchus anatinus oan-mir-223 precursor miRNA

Gene family

MIPF0000067; mir-223

Sequence

374 reads, 13 reads per million, 5 experiments

gcgaccacgugaccacaccgcagugccgcgcucCGUGUAUUUGACAAGCUGAGUUGgacacuccgugugguuugagUGUCAGUUUGUCAAAUACCCUAagugaggcaugcucacccauguuugc
((((.((.((((.......(((.((((.((((..(.((((((((((((((......(((((((.(......).))))))))))))))))))))).)..)))).)))))))))))...)).))))

Structure

    c  --c    ccacacc   g    g    cC U              GAGUUG       c ug 
gcga ca   guga       gca ugcc cgcu  G GUAUUUGACAAGCU      gacacuc g  u
|||| ||   ||||       ||| |||| ||||  | ||||||||||||||      ||||||| |   
cguu gu   cacu       cgu acgg guga  C CAUAAACUGUUUGA      CUGUgag u  g
    u  acc    -------   -    a    AU C              ------       u ug 

Annotation confidence High

Genome context

Contig3675: 6073-6196 [+]

Mature oan-miR-223-5p

• Accession: MIMAT0007019
• Description: Ornithorhynchus anatinus oan-miR-223-5p mature miRNA
• Sequence: 34 - CGUGUAUUUGACAAGCUGAGUUG - 56
• Evidence: experimental ; Illumina [1]

Mature oan-miR-223-3p

• Accession: MIMAT0007020
• Description: Ornithorhynchus anatinus oan-miR-223-3p mature miRNA
• Sequence: 77 - UGUCAGUUUGUCAAAUACCCUA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004