miRBase entry: oan-mir-194-2

Stem-loop oan-mir-194-2


Accession
MI0006795
Description
Ornithorhynchus anatinus oan-mir-194-2 precursor miRNA
Gene family
MIPF0000055; mir-194


Sequence

28840 reads, 529 reads per million, 5 experiments
uuguggagcccaccccuUGUAACAGCAACUCCAUGUGGAagggucuccugguuCCAGUGGAGCUGCUGUUAUCUUgggugggucauccggga
((.((((((((((((...(((((((((.((((((.((((((((...)))..))))))))))).)))))))))...))))))))..)))).))

Structure
  g    --        cuU         A      G     --   u 
uu ugga  gcccaccc   GUAACAGCA CUCCAU UGGAa  ggg  
|| ||||  ||||||||   ||||||||| |||||| |||||  ||| c
ag gccu  uggguggg   UAUUGUCGU GAGGUG ACCuu  ucc  
  g    ac        UUC         C      -     gg   u 


Annotation confidence High
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Genome context
Contig35411: 246-337 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-194-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-194-5p

Accession MIMAT0006999
Description Ornithorhynchus anatinus oan-miR-194-5p mature miRNA
Sequence 18 - UGUAACAGCAACUCCAUGUGGA - 39
Evidence experimental
Illumina [1]

Mature oan-miR-194-3p

Accession MIMAT0007018
Description Ornithorhynchus anatinus oan-miR-194-3p mature miRNA
Sequence 54 - CCAGUGGAGCUGCUGUUAUCUU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004