miRBase entry: oan-mir-192

Stem-loop oan-mir-192


Accession
MI0006794
Description
Ornithorhynchus anatinus oan-mir-192 precursor miRNA
Gene family
MIPF0000063; mir-192


Sequence

538288 reads, 10897 reads per million, 5 experiments
agagcgcacagggcuCUGACCUAUGAAUUGACAGCCaguucucucugaccccucuggCUGCCAAUUCCAUAGGUCACAGguauguucgccu
((.(((.(((.(.((.((((((((((((((.(((((((...............))))))).))))).))))))))).)).).))).)))))

Structure
  a   c   g g  C         -     A       uucucu 
ag gcg aca g cu UGACCUAUG AAUUG CAGCCag      c
|| ||| ||| | || ||||||||| ||||| |||||||      u
uc cgc ugu u GA ACUGGAUAC UUAAC GUCgguc      g
  -   u   a g  C         C     C       ucccca 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Contig35411: 1-91 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-192
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-192-5p

Accession MIMAT0007016
Description Ornithorhynchus anatinus oan-miR-192-5p mature miRNA
Sequence 16 - CUGACCUAUGAAUUGACAGCC - 36
Evidence experimental
Illumina [1]

Mature oan-miR-192-3p

Accession MIMAT0007017
Description Ornithorhynchus anatinus oan-miR-192-3p mature miRNA
Sequence 58 - CUGCCAAUUCCAUAGGUCACAG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004