miRBase entry: oan-mir-449a

Stem-loop oan-mir-449a


Accession
MI0006793
Description
Ornithorhynchus anatinus oan-mir-449a precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

83 reads, 49 reads per million, 4 experiments
uuugaaguggcaucugugugcgauaguuUGGCAGUGUUUGUUAGCUGGUugaauauuuaaauggcaccagcugacagacagcugcuuuccuauugcauguaccacgagcaucgaa
......((((.((....(((((((((...((((((((((((((((((((...((......))...))))))))))))))).)))))...))))))))))).))))..........

Structure
----uuugaa    c  cugu         uuU     -               uga  au 
          gugg au    gugcgauag   GGCAG UGUUUGUUAGCUGGU   au  u
          |||| ||    |||||||||   ||||| |||||||||||||||   ||   
          cacc ug    uacguuauc   ucguc acagacagucgacca   ua  u
aagcuacgag    a  ----         cuu     g               cgg  aa 


Annotation confidence Not enough data
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Genome context
Contig3432: 5911-6025 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-449a

Accession MIMAT0007015
Description Ornithorhynchus anatinus oan-miR-449a mature miRNA
Sequence 29 - UGGCAGUGUUUGUUAGCUGGU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004