Stem-loop oan-mir-194-1

Accession

MI0006782

Description

Ornithorhynchus anatinus oan-mir-194-1 precursor miRNA

Gene family

MIPF0000055; mir-194

Sequence

28265 reads, 507 reads per million, 5 experiments

gagaccaacaguguuaucauaUGUAACAGCAACUCCAUGUGGAuuaugcugauuuccaguggagaggcuguuacuuuugauggaaacuggcaaacuac
........((((.((((((...((((((((..((((((.((((...........))))))))))..))))))))...))))))..)))).........

Structure

-gagaccaa    -g      uaU        AA      G    uuau 
         cagu  uuauca   GUAACAGC  CUCCAU UGGA    g
         ||||  ||||||   ||||||||  |||||| ||||    c
         guca  gguagu   cauugucg  gaggug accu    u
caucaaacg    aa      uuu        ga      -    uuag 

Annotation confidence Not enough data

Genome context

Contig27098: 3308-3405 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-194-1

Mature oan-miR-194-5p

• Accession: MIMAT0006999
• Description: Ornithorhynchus anatinus oan-miR-194-5p mature miRNA
• Sequence: 22 - UGUAACAGCAACUCCAUGUGGA - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004