miRBase entry: oan-mir-1359

Stem-loop oan-mir-1359


Accession
MI0006778
Description
Ornithorhynchus anatinus oan-mir-1359 precursor miRNA


Sequence

152 reads, 6 reads per million, 5 experiments
ggcuagaggggaguccaagauuggggggCUCCACAAGCUCGGGCCCAGUuccagcugcagaaugccugaagccaagggguggugcuugggaauguggggccggacugaauauacaacacucucucccugcugaaauccaagaagcc
((((((.((((((((((....)))).(((((((((..((((((((((.((((.(((.(((.....))).)))...))))))).)))))))..)))))))))(((.((.........)).))))))))).))...........))))

Structure
    -----------  a      --------uccaagauugggg         AG       -   G    --a   g   a 
ggcu           ag ggggag                     ggCUCCACA  CUCGGGC CCA Uucc   gcu cag a
||||           || ||||||                     |||||||||  ||||||| ||| ||||   ||| ||| u
ccga           uc ucccuc                     ccggggugu  ggguucg ggu gggg   cga guc g
    agaaccuaaag  g      ucucacaacauauaagucagg         aa       u   -    aac   a   c 


Annotation confidence Not enough data
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Genome context
Contig26295: 4350-4495 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-1359
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1359

Accession MIMAT0006993
Description Ornithorhynchus anatinus oan-miR-1359 mature miRNA
Sequence 29 - CUCCACAAGCUCGGGCCCAGU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004