Stem-loop oan-mir-7-2

Accession

MI0006774

Description

Ornithorhynchus anatinus oan-mir-7-2 precursor miRNA

Gene family

MIPF0000022; mir-7

Sequence

15352 reads, 438 reads per million, 5 experiments

gcugguccuggccgggccccgucUGGAAGACUAGUGAUUUUGUUGUucucuagcugaccgcacgaCAACAAAUCCCAGUCUGCCUGAcggugcccgguguccucgucgggggccgugc
(((((((((.(((((((.(((((.((.(((((.(.(((((.((((((.....((.....))..)))))))))))).))))).)).))))).)))))).........).))))))).))

Structure

  -       g ---------      c     U  A     A U     U      cucua  u 
gc ugguccu g         ccgggc ccguc GG AGACU G GAUUU GUUGUu     gc g
|| ||||||| |         |||||| ||||| || ||||| | ||||| ||||||     || a
cg gccgggg c         ggcccg ggcAG CC UCUGA C CUAAA CAACag     cg c
  u       g ugcuccugu      u     U  G     C -     -      ---ca  c 

Annotation confidence High

Genome context

Contig242840: 301-418 [+]

Mature oan-miR-7-5p

• Accession: MIMAT0006986
• Description: Ornithorhynchus anatinus oan-miR-7-5p mature miRNA
• Sequence: 24 - UGGAAGACUAGUGAUUUUGUUGU - 46
• Evidence: experimental ; Illumina [1]

Mature oan-miR-7-3p

• Accession: MIMAT0006987
• Description: Ornithorhynchus anatinus oan-miR-7-3p mature miRNA
• Sequence: 66 - CAACAAAUCCCAGUCUGCCUGA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004