miRBase entry: oan-let-7e

Stem-loop oan-let-7e


Accession
MI0006773
Description
Ornithorhynchus anatinus oan-let-7e precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

3210869 reads, 51664 reads per million, 5 experiments
ggcucccaccacaguccuguccuugaggcUGAGGUAGUAGAUUGAAUAGUUguggggucacggccucccugugugcuaaCUAUACAAUCUACUGUCUUUCCugaggcgacagucaguucgcc
((((........))))((((((((.(((..((((((((((((((.(((((..(((.(.(((((.....)))))).)))))))).)))))))))))))).))).))).)))))..........

Structure
ggcucccaccacaguc     -   g   cU              A     Ug   g u     c 
                cuguc cuu agg  GAGGUAGUAGAUUG AUAGU  ugg g cacgg c
                ||||| ||| |||  |||||||||||||| |||||  ||| | ||||| u
                gacag gga uCC  UUCUGUCAUCUAAC UAUCa  auc u guguc c
------ccgcuugacu     c   g   -U              A     --   g -     c 


Annotation confidence High
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Genome context
Contig239044: 265-386 [+]

Database links

Mature oan-let-7e-5p

Accession MIMAT0006984
Description Ornithorhynchus anatinus oan-let-7e-5p mature miRNA
Sequence 30 - UGAGGUAGUAGAUUGAAUAGUU - 51
Evidence experimental
Illumina [1]
Database links

Mature oan-let-7e-3p

Accession MIMAT0006985
Description Ornithorhynchus anatinus oan-let-7e-3p mature miRNA
Sequence 80 - CUAUACAAUCUACUGUCUUUCC - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004