Stem-loop oan-mir-142

Accession

MI0006772

Description

Ornithorhynchus anatinus oan-mir-142 precursor miRNA

Gene family

MIPF0000084; mir-142

Sequence

16091 reads, 354 reads per million, 5 experiments

cgacagacagacagacagugcagucaucCAUAAAGUAGAAAGCACUACUaacagcgcuguagggUGUAGUGUUUCCUACUUUAUGGaugaguguacugugggcuucggag
(((.....((.(..((((((((.(((((((((((((((.(((((((((.....((.(....).))))))))))).))))))))))))))).))))))))..))))))...

Structure

---   cagac  a ag        g               A         Uaaca  g u 
   cga     ag c  acagugca ucaucCAUAAAGUAG AAGCACUAC     gc c g
   |||     || |  |||||||| ||||||||||||||| |||||||||     || |  
   gcu     uc g  ugucaugu aguaGGUAUUUCAUC UUUGUGAUG     Ug g u
gag   -----  - gg        g               C         -----  g a 

Annotation confidence High

Genome context

Contig23450: 1362-1471 [-]

Mature oan-miR-142-5p

• Accession: MIMAT0006982
• Description: Ornithorhynchus anatinus oan-miR-142-5p mature miRNA
• Sequence: 29 - CAUAAAGUAGAAAGCACUACU - 49
• Evidence: experimental ; Illumina [1]

Mature oan-miR-142-3p

• Accession: MIMAT0006983
• Description: Ornithorhynchus anatinus oan-miR-142-3p mature miRNA
• Sequence: 65 - UGUAGUGUUUCCUACUUUAUGG - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004