miRBase entry: oan-mir-1421h

Stem-loop oan-mir-1421h


Accession
MI0006769
Description
Ornithorhynchus anatinus oan-mir-1421h precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

68 reads, 100 reads per million, 2 experiments
uacugcacggugugagcUGGUCACCUGACUUGCAGUGUggugauaguggaacaCACUGCAUACCCUGUGACCUCCcuacacagugcugug
(((.((((.(((((.(..((((((......(((((((((............)))))))))......))))))..).))))).)))).)))

Structure
   u    g     a cU      CUGACU         gugau 
uac gcac gugug g  GGUCAC      UGCAGUGUg     a
||| |||| ||||| |  ||||||      |||||||||      
gug cgug cacau C  CCAGUG      ACGUCACac     g
   u    a     c CU      UCCCAU         aaggu 


Annotation confidence Not enough data
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Genome context
Contig22847: 6874-6963 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421h-5p

Accession MIMAT0006977
Description Ornithorhynchus anatinus oan-miR-1421h-5p mature miRNA
Sequence 18 - UGGUCACCUGACUUGCAGUGU - 38
Evidence experimental
Illumina [1]

Mature oan-miR-1421h-3p

Accession MIMAT0006978
Description Ornithorhynchus anatinus oan-miR-1421h-3p mature miRNA
Sequence 54 - CACUGCAUACCCUGUGACCUCC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004