miRBase entry: oan-mir-1421g-1

Stem-loop oan-mir-1421g-1


Accession
MI0006768
Description
Ornithorhynchus anatinus oan-mir-1421g-1 precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

4786 reads, 2371 reads per million, 4 experiments
ggcuucaggugacauacggcacggugcgAGGGGGUCGUACGUCAUGCAGAaugaugguggaauacgcUGCGUUGCGUGCGACUUCCCUUcaccgagcugggucucuccggcc
((((..(((.(((...((((.(((((.(((((((((((((((.((((((....((......))...)))))).))))))))).))))))))))).)))).))))))..))))

Structure
    uc   u   aua    a     c      -         C      Aaug  gg 
ggcu  agg gac   cggc cggug gAGGGG GUCGUACGU AUGCAG    au  u
||||  ||| |||   |||| ||||| |||||| ||||||||| ||||||    ||   
ccgg  ucu cug   gucg gccac UUCCCU CAGCGUGCG UGCGUc    ua  g
    cc   -   --g    a     -      U         U      -gca  ag 


Annotation confidence Not enough data
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Genome context
Contig22847: 6129-6240 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421g-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421g-5p

Accession MIMAT0006975
Description Ornithorhynchus anatinus oan-miR-1421g-5p mature miRNA
Sequence 29 - AGGGGGUCGUACGUCAUGCAGA - 50
Evidence experimental
Illumina [1]

Mature oan-miR-1421g-1-3p

Accession MIMAT0006976
Description Ornithorhynchus anatinus oan-miR-1421g-1-3p mature miRNA
Sequence 68 - UGCGUUGCGUGCGACUUCCCUU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004