miRBase entry: oan-mir-1421b

Stem-loop oan-mir-1421b


Accession
MI0006763
Description
Ornithorhynchus anatinus oan-mir-1421b precursor miRNA
Gene family
MIPF0000564; mir-1421


Sequence

755 reads, 715 reads per million, 3 experiments
gcauggcguuuCGAGGUCACAUGUGGUGCAGCAugauucaggaacaugCCGCGCAGCAUGUGACCUUCCUacaccgugc
((((((.((...((((((((((((.((((.(((((.........))))).)))).))))))))))))...)).))))))

Structure
      c  uuC            G    A     auu 
gcaugg gu   GAGGUCACAUGU GUGC GCAug   c
|||||| ||   |||||||||||| |||| |||||   a
cgugcc ca   UUCCAGUGUACG CGCG Cguac   g
      a  UCC            A    C     aag 


Annotation confidence Not enough data
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Genome context
Contig22847: 1681-1759 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from oan-mir-1421b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1421b-5p

Accession MIMAT0006965
Description Ornithorhynchus anatinus oan-miR-1421b-5p mature miRNA
Sequence 12 - CGAGGUCACAUGUGGUGCAGCA - 33
Evidence experimental
Illumina [1]

Mature oan-miR-1421b-3p

Accession MIMAT0006966
Description Ornithorhynchus anatinus oan-miR-1421b-3p mature miRNA
Sequence 49 - CCGCGCAGCAUGUGACCUUCCU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004