miRBase entry: oan-mir-27b

Stem-loop oan-mir-27b


Accession
MI0006758
Description
Ornithorhynchus anatinus oan-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
1 open access papers mention oan-mir-27b
(1 sentences)

Sequence

108506 reads, 1962 reads per million, 5 experiments
gccgucucucugucucucugucgcggcgcAGAGCUUAGCUGAUUGGUGAACagugauugcuggacucuuugUUCACAGUGGCUAAGUUCUGCgcccgcagagaaggggacggacggc
(((((((.(((.(.((((((.((.((((((((((((((((.((((.(((((((.((((....)).)).))))))))))))))))))))))))))))))))))).).))).)))))))

Structure
       c   g c      u  c                G    G       u  -  g 
gccgucu ucu u ucucug cg ggcgcAGAGCUUAGCU AUUG UGAACag ga uu c
||||||| ||| | |||||| || |||||||||||||||| |||| ||||||| || ||  
cggcagg agg g agagac gc ccgCGUCUUGAAUCGG UGAC ACUUguu cu ag u
       c   g a      -  -                -    -       u  c  g 


Annotation confidence High
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Genome context
Contig22293: 6340-6456 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-27b-5p

Accession MIMAT0006956
Description Ornithorhynchus anatinus oan-miR-27b-5p mature miRNA
Sequence 30 - AGAGCUUAGCUGAUUGGUGAAC - 51
Evidence experimental
Illumina [1]
Database links

Mature oan-miR-27b-3p

Accession MIMAT0006957
Description Ornithorhynchus anatinus oan-miR-27b-3p mature miRNA
Sequence 72 - UUCACAGUGGCUAAGUUCUGC - 92
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004