miRBase entry: oan-mir-1354

Stem-loop oan-mir-1354


Accession
MI0006753
Description
Ornithorhynchus anatinus oan-mir-1354 precursor miRNA


Sequence

164 reads, 16 reads per million, 5 experiments
gcggcggggggcagggggggcgggcagCCUCGUGAUGAUGUGCGGCUUagggugacucgaccggcccggcucagucccggggccccgacccaucaaccaggucaguaaucuuggcgggcGCUGCAGAGCCGUGCGCGCuggcugu
(((((.(((.(((.((....(..((((((((((.(.(((.((((((((..((((..(((...(((((((.......)).))))).)))..))))....))))).)))))).).))))).))))).)..)).))).).)).)))))

Structure
     g  - g   g  gggg gg     -     G U   G   -     --ag    ac   acc     -  cu 
gcggc gg g gca gg    c  gcagC CUCGU A GAU UGC GGCUU    ggug  ucg   ggccc gg  c
||||| || | ||| ||    |  ||||| ||||| | ||| ||| |||||    ||||  |||   ||||| ||  a
ugucg uC C CGU CC    G  CGUCG gggcg u cua aug cugga    cuac  agc   ccggg cc  g
     g  G G   G  --GA -A     c     g u   -   a     ccaa    cc   --c     g  cu 


Annotation confidence Not enough data
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Genome context
Contig20610: 8890-9034 [+]

Database links

Mature oan-miR-1354-5p

Accession MIMAT0006947
Description Ornithorhynchus anatinus oan-miR-1354-5p mature miRNA
Sequence 28 - CCUCGUGAUGAUGUGCGGCUU - 48
Evidence experimental
Illumina [1]

Mature oan-miR-1354-3p

Accession MIMAT0006948
Description Ornithorhynchus anatinus oan-miR-1354-3p mature miRNA
Sequence 120 - GCUGCAGAGCCGUGCGCGC - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004