miRBase entry: oan-mir-1351

Stem-loop oan-mir-1351


Accession
MI0006749
Description
Ornithorhynchus anatinus oan-mir-1351 precursor miRNA


Sequence

113 reads, 6 reads per million, 4 experiments
gggccaaaccgcgguccuccugcugggcCCGAGCCCCAGCCAUGUCCGAGUcucguguaucgaguuggcUUGGCUUUGGCUGGGGCGGGUccccuuuggagguggccc
((((((.........(((((....((((((..((((((((((...((((((((((.....))))...))))))...)))))))))))))))).....)))))))))))

Structure
      aaccgcggu     -ugcu      GA          UGU      ---    u 
gggcca         ccucc     gggcCC  GCCCCAGCCA   CCGAGU   cucg g
||||||         |||||     ||||||  ||||||||||   ||||||   |||| u
cccggu         ggagg     ccUGGG  CGGGGUCGGU   GGUUcg   gagc a
      ---------     uuucc      --          UUC      guu    u 


Annotation confidence Not enough data
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Genome context
Contig19877: 5135-5242 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-1351
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1351-5p

Accession MIMAT0006943
Description Ornithorhynchus anatinus oan-miR-1351-5p mature miRNA
Sequence 29 - CCGAGCCCCAGCCAUGUCCGAGU - 51
Evidence experimental
Illumina [1-2]

Mature oan-miR-1351-3p

Accession MIMAT0026756
Description Ornithorhynchus anatinus oan-miR-1351-3p mature miRNA
Sequence 70 - UUGGCUUUGGCUGGGGCGGGU - 90
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45