miRBase entry: oan-mir-1350

Stem-loop oan-mir-1350


Accession
MI0006747
Description
Ornithorhynchus anatinus oan-mir-1350 precursor miRNA


Sequence

153 reads, 5 reads per million, 5 experiments
agguggcaaugggcaguauguuuccUGUCAACUGGGUCUCUCCUAGAuaggggaagccacucccagcucagaagggccuucgguuugucaucgggagacacgcccggccccu
(((.(((..(((((....(((((((((..((((((((.((((((....)))))).))).......((((....))))...)))))......))))))))).)))))))))))

Structure
   u   aa     agua         ----UC     ----------------------   C      A 
agg ggc  ugggc    uguuuccUG      AACUG                      GGU UCUCCU G
||| |||  |||||    |||||||||      |||||                      ||| ||||||  
ucc ccg  gcccg    acagagggc      uuggc                      ccg agggga A
   -   --     ---c         uacugu     uuccgggaagacucgacccuca   a      u 


Annotation confidence Not enough data
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Genome context
Contig191148: 185-296 [+]

Database links

Mature oan-miR-1350

Accession MIMAT0006940
Description Ornithorhynchus anatinus oan-miR-1350 mature miRNA
Sequence 26 - UGUCAACUGGGUCUCUCCUAGA - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004