miRBase entry: oan-mir-1348

Stem-loop oan-mir-1348


Accession
MI0006742
Description
Ornithorhynchus anatinus oan-mir-1348 precursor miRNA


Sequence

132 reads, 10 reads per million, 5 experiments
gaacccaggucuuugugaugucuccuuggaggauuaagaaagucgagucauugcaguccagcagguucgacugauacgcuccuccuacaugaaaAAGGUAGAGGAACAGGCCCUGggugcc
..(((((((.(((.((..(.(((((((((((((.......(((((((.(.((((......)))))))))))).......)))))).........)))).))).).))))).)))))))...

Structure
-ga       u   u  ga g   -    ---------      uuaagaa       u a    ag 
   acccagg cuu gu  u ucu ccuu         ggagga       agucgag c uugc  u
   ||||||| ||| ||  | ||| ||||         ||||||       ||||||| | ||||   
   uggGUCC GGA CA  G AGA GGAA         ccuccu       ucagcuu g gacg  c
ccg       C   -  -A G   U    aaaguacau      cgcauag       - -    ac 


Annotation confidence Not enough data
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Genome context
Contig18997: 11350-11470 [+]

Database links

Mature oan-miR-1348

Accession MIMAT0006933
Description Ornithorhynchus anatinus oan-miR-1348 mature miRNA
Sequence 95 - AAGGUAGAGGAACAGGCCCUG - 115
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004