Stem-loop oan-mir-1420c

Accession

MI0006737

Description

Ornithorhynchus anatinus oan-mir-1420c precursor miRNA

Gene family

MIPF0000574; mir-1420

Sequence

162 reads, 154 reads per million, 3 experiments

ugcucacuucacugcucaaccuugccuAUCCGAUCGGCUUGCACUGUCUgguuauauuaaagggAAAGUGCUUCCCGUUCGGAUGAguuagguuugaggugugaca
........((((..((((((((.((.(((((((.(((...(((((.(((.............))).)))))...))).))))))).)).))).)))))..))))..

Structure

ugcucacu    ug     -   u  c       U   CUU     G   gguua 
        ucac  cucaa ccu gc uAUCCGA CGG   GCACU UCU     u
        ||||  ||||| ||| || ||||||| |||   ||||| |||     a
        agug  gaguu gga ug GUAGGCU GCC   CGUGA Agg     u
------ac    ug     u   u  A       U   CUU     A   gaaau 

Annotation confidence High

Genome context

Contig1754: 87021-87126 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oan-mir-1420c

Mature oan-miR-1420c-3p

• Accession: MIMAT0006926
• Description: Ornithorhynchus anatinus oan-miR-1420c-3p mature miRNA
• Sequence: 65 - AAAGUGCUUCCCGUUCGGAUGA - 86
• Evidence: experimental ; Illumina [1-2]

Mature oan-miR-1420c-5p

• Accession: MIMAT0026754
• Description: Ornithorhynchus anatinus oan-miR-1420c-5p mature miRNA
• Sequence: 28 - AUCCGAUCGGCUUGCACUGUCU - 49
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45