miRBase entry: oan-mir-1420a

Stem-loop oan-mir-1420a


Accession
MI0006735
Description
Ornithorhynchus anatinus oan-mir-1420a precursor miRNA
Gene family
MIPF0000574; mir-1420


Sequence

45 reads, 70 reads per million, 4 experiments
gcaucauuccccaucuuugucaAUUCGAUCAGCCUGCACUCUcugguugugucagaaggAAAGUGCUUCCUGUUCGGAUAAacaggcuggggugcggc
(((.....(((((.(((.((..((((((.(((...(((((.(((..(((...)))..))).)))))...))).))))))..))))).))))))))...

Structure
---   ucauu     u   u  ca      U   CCU     C   gg   u 
   gca     cccca cuu gu  AUUCGA CAG   GCACU Ucu  uug  
   |||     ||||| ||| ||  |||||| |||   ||||| |||  ||| g
   cgu     ggggu gga ca  UAGGCU GUC   CGUGA Agg  gac  
cgg   -----     c   -  AA      U   CUU     A   aa   u 


Annotation confidence Not enough data
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Genome context
Contig1754: 86316-86413 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oan-mir-1420a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1420a-5p

Accession MIMAT0006922
Description Ornithorhynchus anatinus oan-miR-1420a-5p mature miRNA
Sequence 23 - AUUCGAUCAGCCUGCACUCU - 42
Evidence experimental
Illumina [1]

Mature oan-miR-1420a-3p

Accession MIMAT0006923
Description Ornithorhynchus anatinus oan-miR-1420a-3p mature miRNA
Sequence 60 - AAAGUGCUUCCUGUUCGGAUAA - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004