miRBase entry: oan-mir-92b

Stem-loop oan-mir-92b


Accession
MI0006732
Description
Ornithorhynchus anatinus oan-mir-92b precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

25 reads, 1 reads per million, 4 experiments
ucaaaagccaggaaaagucaaaccccuuucuaugcagguugggaucaguggaaaugcuguuugccuuuggUAUUGCACUUGUCCCAGCCUGUugagauuacugaagauuguggcuga
.....(((((.((....(((........(((..((((((((((((.((((..(((((((........))))))).)))).))))))))))))..)))....)))...)).)))))..

Structure
ucaaa     g  aaag   aaccccuu   au            c    ga       uuu 
     agcca ga    uca        ucu  gcagguugggau agug  aaugcug   g
     ||||| ||    |||        |||  |||||||||||| ||||  |||||||    
     ucggu uu    agu        aga  UGUCCGACCCUG UCAC  UUAUggu   c
---ag     g  -aga   ----cauu   gu            U    -G       uuc 


Annotation confidence Not enough data
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Genome context
Contig159206: 733-849 [-]

Database links

Mature oan-miR-92b

Accession MIMAT0006918
Description Ornithorhynchus anatinus oan-miR-92b mature miRNA
Sequence 71 - UAUUGCACUUGUCCCAGCCUGU - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004