miRBase entry: oan-mir-1345

Stem-loop oan-mir-1345


Accession
MI0006731
Description
Ornithorhynchus anatinus oan-mir-1345 precursor miRNA


Sequence

5 reads, 0 reads per million, 4 experiments
gcgccaacgcucagucgggggcgggaggGCCGAGGAGCAGGACGUGuguuggcgcgcgcgcgcucucucuuugccgaccgccgucgccgccgcgcgacuuauuggacgc
(((((((.....((((((.(((((((.((((((((((.(((.(((((((......))))))).))))))))))......))).)).))))).).)))))..)))).)))

Structure
   -    cgcuc     - g     -  g   ------       C   A       ug 
gcg ccaa     agucg g ggcgg ga gGC      CGAGGAG AGG CGUGugu  g
||| ||||     ||||| | ||||| || |||      ||||||| ||| |||||||   
cgc gguu     ucagc c ccgcc cu ccg      guuucuc ucu gcgcgcg  c
   a    ---au     g g     g  g   ccagcc       -   c       cg 


Annotation confidence Not enough data
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Genome context
Contig157565: 368-476 [-]

Database links

Mature oan-miR-1345

Accession MIMAT0006917
Description Ornithorhynchus anatinus oan-miR-1345 mature miRNA
Sequence 29 - GCCGAGGAGCAGGACGUG - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004