Stem-loop oan-mir-30a

Accession

MI0006729

Description

Ornithorhynchus anatinus oan-mir-30a precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

1904338 reads, 35067 reads per million, 5 experiments

gaguggauauuggcacugacagugagcgacUGUAAACAUCCUCGACUGGAAGCugugaagcagcagauggggCUUUCAGUCGGAUGUUUGCAGCugccuacugccuuagacuucaagaaauguuaauauaguugcuu
((((((((((((((((((((((((.(((.((((((((((((..(((((((((((.(............).))))))))))))))))))))))).))).)))))..))))...........)))))))))..))))))

Structure

      --         -----------    --     a   a            UC           g gaagc 
gagugg  auauuggca           cuga  cagug gcg cUGUAAACAUCC  GACUGGAAGCu u     a
||||||  |||||||||           ||||  ||||| ||| ||||||||||||  ||||||||||| |      
uucguu  uauaauugu           gauu  gucau cgu GACGUUUGUAGG  CUGACUUUCgg g     g
      ga         aaagaacuuca    cc     c   C            --           g uagac 

Annotation confidence High

Genome context

Contig1501: 96963-97099 [-]

Mature oan-miR-30a-5p

• Accession: MIMAT0006913
• Description: Ornithorhynchus anatinus oan-miR-30a-5p mature miRNA
• Sequence: 31 - UGUAAACAUCCUCGACUGGAAGC - 53
• Evidence: experimental ; Illumina [1]

Mature oan-miR-30a-3p

• Accession: MIMAT0006914
• Description: Ornithorhynchus anatinus oan-miR-30a-3p mature miRNA
• Sequence: 73 - CUUUCAGUCGGAUGUUUGCAGC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004