miRBase entry: oan-mir-219

Stem-loop oan-mir-219


Accession
MI0006721
Description
Ornithorhynchus anatinus oan-mir-219 precursor miRNA
Gene family
MIPF0000044; mir-219


Sequence

53999 reads, 1539 reads per million, 4 experiments
ggcccaaccgagccagcggggccccgccgcUGAUUGUCCAAACGCAAUUCUUGugcgaguuugcggccaaccgAGAAUUGUGACUGGACAUCUGUggcugggcucccggcgcgacgcgggcc
(((((...((.(((.(.(((((((.(((((.(((.(((((..(((((((((((((((....))))......)))))))))))..)))))))).))))).))))))))))).))....)))))

Structure
     -aac  a   a c       c     U   U     AA           ------    a 
ggccc    cg gcc g ggggccc gccgc GAU GUCCA  CGCAAUUCUUG      ugcg g
|||||    || ||| | ||||||| ||||| ||| |||||  |||||||||||      ||||  
ccggg    gc cgg c ccucggg cggUG CUA CAGGU  GUGUUAAGAgc      gcgu u
     cgca  g   - -       u     U   -     CA           caaccg    u 


Annotation confidence High
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Genome context
Contig12675: 21656-21777 [-]

Database links

Mature oan-miR-219-5p

Accession MIMAT0006899
Description Ornithorhynchus anatinus oan-miR-219-5p mature miRNA
Sequence 31 - UGAUUGUCCAAACGCAAUUCUUG - 53
Evidence experimental
Illumina [1]

Mature oan-miR-219-3p

Accession MIMAT0006900
Description Ornithorhynchus anatinus oan-miR-219-3p mature miRNA
Sequence 74 - AGAAUUGUGACUGGACAUCUGU - 95
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004