miRBase entry: oan-mir-1422c

Stem-loop oan-mir-1422c


Accession
MI0006717
Description
Ornithorhynchus anatinus oan-mir-1422c precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

2618 reads, 1982 reads per million, 3 experiments
agguggagaugaccauccugauucugguuuCAAUCCAUACUAGUCUUUCUAUauguacagauaauguAGAAAACCUGGUAUGGAUUGUUaccagguucagauuauauacuu
.(((((......)))))((((.((((((..(((((((((((((..(((((((((.........)))))))))..)))))))))))))..)))))).))))...........

Structure
agguggagaugaccauc    u      uu             UC         gua 
                 cuga ucuggu  CAAUCCAUACUAG  UUUCUAUau   c
                 |||| ||||||  |||||||||||||  |||||||||   a
                 gacu ggacca  GUUAGGUAUGGUC  AAAGAugua   g
------uucauauauua    u      UU             CA         aua 


Annotation confidence High
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Genome context
Contig11344: 12544-12654 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from oan-mir-1422c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422c-5p

Accession MIMAT0006891
Description Ornithorhynchus anatinus oan-miR-1422c-5p mature miRNA
Sequence 31 - CAAUCCAUACUAGUCUUUCUAU - 52
Evidence experimental
Illumina [1]

Mature oan-miR-1422c-3p

Accession MIMAT0006892
Description Ornithorhynchus anatinus oan-miR-1422c-3p mature miRNA
Sequence 68 - AGAAAACCUGGUAUGGAUUGUU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004