miRBase entry: oan-mir-1422e

Stem-loop oan-mir-1422e


Accession
MI0006712
Description
Ornithorhynchus anatinus oan-mir-1422e precursor miRNA
Gene family
MIPF0000565; mir-1422


Sequence

405 reads, 451 reads per million, 2 experiments
caugauucuaguuUAAGUCAUGAAAAGGUUUUUUUcagugugcauaaucuGGAAAACCUUAUCAUGGCUAAUaccaugaccaug
((((.((...((...((((((((.(((((((..(((((..........)))))))))))).))))))))...))...)).))))

Structure
    a  cua  uUA        A       UU     ugug 
caug uu   gu   AGUCAUGA AAGGUUU  UUcag    c
|||| ||   ||   |||||||| |||||||  |||||     
guac ag   ca   UCGGUACU UUCCAAA  AGGuc    a
    c  uac  UAA        A       --     uaau 


Annotation confidence Not enough data
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Genome context
Contig11344: 2453-2536 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from oan-mir-1422e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-1422e-5p

Accession MIMAT0006881
Description Ornithorhynchus anatinus oan-miR-1422e-5p mature miRNA
Sequence 14 - UAAGUCAUGAAAAGGUUUUUUU - 35
Evidence experimental
Illumina [1]

Mature oan-miR-1422e-3p

Accession MIMAT0006882
Description Ornithorhynchus anatinus oan-miR-1422e-3p mature miRNA
Sequence 51 - GGAAAACCUUAUCAUGGCUAAU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004