miRBase entry: oan-mir-196a

Stem-loop oan-mir-196a


Accession
MI0006709
Description
Ornithorhynchus anatinus oan-mir-196a precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

10240 reads, 435 reads per million, 3 experiments
gcccgccucgcucagcuggucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaauuuugaacUCGGCAACAAGAAACUGUCUGAguuacaucagucgguuuucgucgugggc
((((((..((...((((((..((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))....))))))..))..))))))

Structure
      cu  cuc      --uc                  A          a  gaa 
gcccgc  cg   agcugg    uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
||||||  ||   ||||||    |||||||||||||||||| |||||||||| ||    
cgggug  gc   uuggcu    acauugAGUCUGUCAAAG ACAACGGCUc aa   u
      cu  -uu      gacu                  A          -  guu 


Annotation confidence High
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Genome context
Contig109061: 759-872 [-]

Database links

Mature oan-miR-196a-5p

Accession MIMAT0006876
Description Ornithorhynchus anatinus oan-miR-196a-5p mature miRNA
Sequence 29 - UAGGUAGUUUCAUGUUGUUGGG - 50
Evidence experimental
Illumina [1]

Mature oan-miR-196a-3p

Accession MIMAT0006877
Description Ornithorhynchus anatinus oan-miR-196a-3p mature miRNA
Sequence 65 - UCGGCAACAAGAAACUGUCUGA - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004