Stem-loop oan-mir-1339

Accession

MI0006699

Description

Ornithorhynchus anatinus oan-mir-1339 precursor miRNA

Sequence

487 reads, 13 reads per million, 4 experiments

ugaugaaagcacuacuaagaacuagauucAGAUGCAAGAGAAUUUUCAGUugucaguuuggguugacUGAAAACUCAUUUUGCAUGCAGaauccaguuugaauauca
..................(((((.(((((.(((((((((((.(((((((((..(.......)..))))))))).)).)))))))).).))))).)))))........

Structure

ugaugaaagcacuacuaa     a     A -        -  A         gu ag 
                  gaacu gauuc G AUGCAAGA GA UUUUCAGUu  c  u
                  ||||| ||||| | |||||||| || |||||||||  |  u
                  uuuga cuaaG C UACGUUUU CU AAAAGUcag  g  u
----------acuauaag     c     A G        A  C         uu gg 

Annotation confidence High

Genome context

7: 15140649-15140755 [+]

Mature oan-miR-1339-5p

• Accession: MIMAT0006861
• Description: Ornithorhynchus anatinus oan-miR-1339-5p mature miRNA
• Sequence: 30 - AGAUGCAAGAGAAUUUUCAGU - 50
• Evidence: experimental ; Illumina [1]

Mature oan-miR-1339-3p

• Accession: MIMAT0006862
• Description: Ornithorhynchus anatinus oan-miR-1339-3p mature miRNA
• Sequence: 68 - UGAAAACUCAUUUUGCAUGCAG - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004