miRBase entry: oan-mir-16c

Stem-loop oan-mir-16c


Accession
MI0006692
Description
Ornithorhynchus anatinus oan-mir-16c precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

343518 reads, 6198 reads per million, 5 experiments
gcccggcucgaugugucggccgugcccUAGCAGCACGUAAAUACUGGAGuuuggggaugccucguugcucuCCAGUAUUGCAUUGCUGCUUGAgcgaggccggacccuccgcgccgccgc
((.((((.((..(.(((((((.(((.(.(((((((....((((((((((..(((((...))))).....))))))))))....))))))).).))).)))).))).)..)).))))..))

Structure
  -c    u  au u   -    g   c U       CGUA          ---uu     a 
gc  cggc cg  g guc ggcc ugc c AGCAGCA    AAUACUGGAG     ugggg  
||  |||| ||  | ||| |||| ||| | |||||||    ||||||||||     ||||| u
cg  gccg gc  c cag ccgg gcg G UCGUCGU    UUAUGACCuc     gcucc  
  cc    c  cu c   g    a   A U       UACG          ucguu     g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
6: 8406045-8406164 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-16c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-16c-5p

Accession MIMAT0006847
Description Ornithorhynchus anatinus oan-miR-16c-5p mature miRNA
Sequence 28 - UAGCAGCACGUAAAUACUGGAG - 49
Evidence experimental
Illumina [1]

Mature oan-miR-16c-3p

Accession MIMAT0006848
Description Ornithorhynchus anatinus oan-miR-16c-3p mature miRNA
Sequence 72 - CCAGUAUUGCAUUGCUGCUUGA - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004