miRBase entry: oan-mir-15c

Stem-loop oan-mir-15c


Accession
MI0006691
Description
Ornithorhynchus anatinus oan-mir-15c precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

5738 reads, 101 reads per million, 5 experiments
gcccacagagcagccuugaggggguugUAGCAGCACAUCAUGGUUUGUagggacaaggagauaCAGACCAUUCUGGGCUGCCUCAaucccccaaggagaacgcgggagaacugggc
(((((....((..(((((.((((((((..(((((.((..((((((((((............))))))))))..)).)))))..))))))))))))).....))........)))))

Structure
     ----caga  ---ag     a        UA     A  UC          gggac 
gccca        gc     ccuug ggggguug  GCAGC CA  AUGGUUUGUa     a
|||||        ||     ||||| ||||||||  ||||| ||  ||||||||||      
cgggu        cg     ggaac ccccuaAC  CGUCG GU  UACCAGACau     a
     caagaggg  caaga     -        UC     G  CU          agagg 


Annotation confidence Not enough data
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Genome context
6: 8405715-8405830 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-15c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-15c-5p

Accession MIMAT0006845
Description Ornithorhynchus anatinus oan-miR-15c-5p mature miRNA
Sequence 28 - UAGCAGCACAUCAUGGUUUGU - 48
Evidence experimental
Illumina [1]

Mature oan-miR-15c-3p

Accession MIMAT0006846
Description Ornithorhynchus anatinus oan-miR-15c-3p mature miRNA
Sequence 64 - CAGACCAUUCUGGGCUGCCUCA - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004