miRBase entry: oan-mir-204

Stem-loop oan-mir-204


Accession
MI0006689
Description
Ornithorhynchus anatinus oan-mir-204 precursor miRNA
Gene family
MIPF0000042; mir-204


Sequence

1581 reads, 28 reads per million, 5 experiments
gaccgccggugauccuugugacugcugagcUUCCCUUUGUCAUCCUAUGCCUggaagucaaaauggggCAGGGACAGCAAAGGGAUGAucaaccgucaccuccaacaccgagauguguc
(((((((((((......(((((.(.(((...(((((((((..((((.(((((.............)))))))))..)))))))))...))).).)))))......))))).).)).)))

Structure
   -  - -     auccuu     u c   gcU         CA    A     ggaag 
gac cg c cggug      gugac g uga   UCCCUUUGU  UCCU UGCCU     u
||| || | |||||      ||||| | |||   |||||||||  |||| |||||     c
cug gu g gccac      cacug c acu   AGGGAAACG  AGGG ACggg     a
   u  a a     aaccuc     c a   AGU         AC    -     guaaa 


Annotation confidence High
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Genome context
5: 14563220-14563338 [-]

Database links

Mature oan-miR-204-5p

Accession MIMAT0006841
Description Ornithorhynchus anatinus oan-miR-204-5p mature miRNA
Sequence 31 - UUCCCUUUGUCAUCCUAUGCCU - 52
Evidence experimental
Illumina [1]

Mature oan-miR-204-3p

Accession MIMAT0006842
Description Ornithorhynchus anatinus oan-miR-204-3p mature miRNA
Sequence 69 - CAGGGACAGCAAAGGGAUGA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004